Motif View

Internal ID 17689296
Source Database TransTermHP TERM 1228
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1228
Sequence GCCCGCCGATTGGCGGGC
Look for more occurrences
Start 4017932
End 4017949
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACGCCCAATAAAAA(5' tail) GCCCGCC(5' stem) AATC(loop) GGCGGGC(3' stem) TTTTTATTGGGCTCA(3' tail). Confidence: 100. opp_overlap 4017932

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685