Motif View

Internal ID 17689299
Source Database TransTermHP TERM 1231
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1231
Sequence CCCGGCAGAAGCCGGG
Look for more occurrences
Start 4020662
End 4020677
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAAACAATAAAAAA(5' tail) CCCGGC(5' stem) TTCT(loop) GCCGGG(3' stem) TTTTTTATTGCAACT(3' tail). Confidence: 100. opp_overlap 4020662, overlap 4020655 4020652

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685