Motif View

Internal ID 17689307
Source Database TransTermHP TERM 1239
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1239
Sequence GCCGGGCCGGTGCCCGGC
Look for more occurrences
Start 4035685
End 4035702
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCTGCACAAAAAA(5' tail) GCCGGGC(5' stem) ACCG(loop) GCCCGGC(3' stem) TGGTGGTTTCATGAT(3' tail). Confidence: 100. opp_overlap 4035682 4035690 4035691

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685