| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas abyssi MT5 |
| Species | Pseudomonas abyssi |
| Strain | MT5 |
| Description/Title | Microbe sample from Pseudomonas abyssi |
| Annotated Genes | 3975 |
| Partial Genes | 81 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Isolation Source | Deep Sea Water |
| Sample Provider | |
|---|---|
| Name | Yunping Xu |
| yl_wei@shou.edu.cn | |
| Institution | Shanghai Ocean University |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 79 |
| Contig N50 | 236029 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN07634961 |
| NCBI Taxonomy ID | 170540 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |