The Pseudomonas Genome Database collaborates with an international panel of expert Pseudomonas researchers to provide high quality updates to the PAO1 genome annotation and make cutting edge genome analysis data available
|Manually-curated annotation updates||3051|
|Curated GO terms||4206|
April 12, 2016
Bug fixes for case where InterPro annotations were not all displaying on gene card and case where a filter by functional name of the results for functional domain mappings page was causing server error.
March 15, 2016
New implementation of gene ontology annotation downloads in CSV and Tab-delimited formats to fix missing "GO term" field and increase processing speed.
March 14, 2016
Searches using a protein's RefSeq accession or GI are back. You can once again enter them in any search form on this site including the form at the top of this page.
March 10, 2016
789 new Pseudomonas genomes added for a total of 2334.
Updated our Pseudomonas Orthologs Groups (POGs) analysis to include 572 complete genomes and draft genomes having less than 100 contigs.
22 manually curated annotation updates including new genes, product names, and subcellular localizations.
Fixed bug that sometimes caused server error when user clicked on "Sequences" tab of gene details page.
February 5, 2016
Updated broken links to Pseudomonas Ortholog Database currently in beta status.
January 13, 2016
Restored an option on the advanced search page to allow retrieval of proteins with no known 3D structure (for a specific isolate). This feature was available in the previous version of our database but had been inadvertently omitted from the new site.
Strains and Isolates in the Database
We welcome all suggested updates to Pseudomonas annotations and no registration is required!
PseudoCAP was the first wholly Internet-based and community-based genome annotation project for analysis of a genome of a free-living organism.
Funding for this work is gratefully provided by Cystic Fibrosis Foundation Therapeutics Inc., a non-profit drug discovery and development affiliate of the Cystic Fibrosis Foundation.