The Pseudomonas Genome Database collaborates with an international panel of expert Pseudomonas researchers to provide high quality updates to the PAO1 genome annotation and make cutting edge genome analysis data available
|Manually-curated annotation updates||3443|
|Curated GO terms||4381|
Dec 11, 2018
Important Notice: Please note there will be a major two or three day downtime taking place between Dec 17 to 20 (originally scheduled for Dec 11 to 13) to implement a major move of our services to new hardware and associated infrastructure. If you have any concerns please contact us and we will try and help where possible. Thank you for your understanding as we work to ensure robust services and we apologize for any inconvenience.
June 15, 2018
New feature. Diamond blastp search results now show an image of the subject protein's genomic context similar to the gene overview page.
New feature. Pseudomonas Ortholog Group data can now be downloaded in fasta format. Tab- and CSV-delimited formats also include amino acid sequence in last column.
June 11, 2018
Updated UWGC transposon insertion annotations to latest version based on the PA_two_allele_library5 spreadsheet at the Manloil lab website. Latest library contains 9429 insertions versus 9425 in the previous version.
May 2, 2018
Fix introduced for error occurring when advanced searches attempt to filter results to only include drug targets.
December 18, 2017
Pseudomonas Genome Database version 17.2 released with focus on updating names for Type VI secretion system genes in PA14 and recently described ncRNAs.
Updated InterPro motif predictions based on InterProScan v5.25-64.0. Coverage expanded to include proteins from draft genomes.
Updated computationally-predicted GO term annotations based on InterProScan v5.25-64.0. Coverage also expanded to include proteins from draft genomes.
New manually annotated GO term annotations and transfer to identical proteins in other strains (indicated in evidence section).
New entries added to our related links page for various P. aeruginosa reference collections at Public Health England.
Strains and Isolates in the Database
We welcome all suggested updates to Pseudomonas annotations and no registration is required!
PseudoCAP was the first wholly Internet-based and community-based genome annotation project for analysis of a genome of a free-living organism.
Funding for this work is gratefully provided by Cystic Fibrosis Foundation Therapeutics Inc., a non-profit drug discovery and development affiliate of the Cystic Fibrosis Foundation.