This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.

By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.

Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).

14230 strains returned

= Popular strains (Ordered by popular strains first, then by strain name, ascending)
Strain Assembly Contigs Assembly Level Genes (partial) BioSample Accession Host Organism Host Disease Isolation Source Location MLST Institution
Pseudomonas aeruginosa PAO1 (Stover et al., 2000) GCF_000006765.1
latest
- Complete Genome 5688 (0) SAMN02603714 human wound Australia: Melbourne 549 (paeruginosa) PathoGenesis Corporation
Strain Details
Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006) GCF_000014625.1
latest
- Complete Genome 5977 (0) SAMN02603591 human burn burn wound 253 (paeruginosa) Massachusetts General Hospital
Strain Details
Pseudomonas aeruginosa PA7 GCF_000017205.1
latest
- Complete Genome 6369 (0) SAMN02603435 human non-respiratory clinical isolate Argentina 1195 (paeruginosa)
J. Craig Venter Institute
Strain Details
Pseudomonas aeruginosa PAK (Cain et al., 2019) - Assembly GCF_902172305.2 GCF_902172305.2
latest
- Complete Genome 5848 (26) SAMEA1695737 human 693 (paeruginosa) European Bioinformatics Institute
SC
Strain Details
Pseudomonas aeruginosa PAK - Assembly GCF_000568855.2 GCF_000568855.2
latest
- Complete Genome 5564 (96) SAMN02483603 human 693 (paeruginosa) University of Texas at Austin
Strain Details
Pseudomonas putida KT2440 (TIGR) GCF_000007565.2
latest
- Complete Genome 5729 (0) SAMN02603999 soil 69 (pputida)
TIGR
Strain Details
Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1
latest
- Complete Genome 5842 (0) SAMN02604017 tomato bacterial speck
TIGR
Strain Details
Pseudomonas aeruginosa CF39S GCF_011466835.1
latest
- Complete Genome 6780 (52) SAMN13226654 human Cystic Fibrosis lung USA: Seattle, Washington 175 (paeruginosa) University of Calgary
Strain Details
Pseudomonas fluorescens SBW25 GCF_000009225.2
latest
- Complete Genome 6106 (5) SAMEA2272316 sugar beet sugar beet leaf United Kingdom: Oxfordshire NERC Institute of Virology and Microbial Ecology,
Wellcome Trust Sanger Institute
Strain Details
Pseudomonas savastanoi pv. phaseolicola 1448A GCF_000012205.1
latest
- Complete Genome 5437 (0) SAMN02603162 kidney bean halo blight
Cornell University
Strain Details
Pseudomonas stutzeri A1501 GCF_000013785.1
latest
- Complete Genome 4209 (0) SAMN02603910 soil, rice roots China
The Biotechnology Research Institute,The Chinese Academy of Agricultural Sciences
Strain Details
Pseudomonas aeruginosa LESB58 GCF_000026645.1
latest
- Gapless Chromosome 6028 (0) SAMEA1705916 human cystic fibrosis sputum United Kingdom: Liverpool 146 (paeruginosa)
Wellcome Trust Sanger Institute
Strain Details
Pseudomonas protegens Pf-5 GCF_000012265.1
latest
- Complete Genome 6273 (0) SAMN02604012 soil USA: Texas
TIGR
Strain Details
Pseudomonas abietaniphila ATCC 700689 GCF_900100795.1
latest
54 Contig 6535 (107) SAMN05216605 missing missing DOE Joint Genome Institute
Strain Details
Pseudomonas abietaniphila KF701 GCF_000974525.1
latest
140 Contig 6154 (98) SAMD00023455 Japan:Kitakyushu AIST Bioproduction Research Institute microbial and genetic resource research group
National Institute of Advanced Industrial Science and Technology (AIST)
Strain Details
Pseudomonas abietaniphila KF717 GCF_000876035.1
latest
97 Contig 6158 (114) SAMD00023465 Japan:Kitakyushu AIST Bioproduction Research Institute microbial and genetic resource research group
National Institute of Advanced Industrial Science and Technology (AIST)
Strain Details
Pseudomonas abyssi MT5 GCF_002307495.1
latest
79 Contig 3975 (81) SAMN07634961 Deep Sea Water Shanghai Ocean University
Strain Details
Pseudomonas acidophila ATCC 31363 GCF_002362315.1
latest
11 Contig 6173 (78) SAMN06246902 soil University of Notre Dame
Strain Details
Pseudomonas aegrilactucae MAFF 301350 GCF_019168305.1
latest
- Contig 5084 (277) SAMN19959866 Japan:Fukuoka National Agriculture and Food Research Organization (NARO)
Strain Details
Pseudomonas aeruginosa #700 GCF_030688825.1
latest
- Contig 6779 (64) SAMN36630189 non-cystic fibrosis sputum China 235 (paeruginosa) Second Affiliated Hospital of Zhejiang University
Strain Details