Pseudomonas aeruginosa PAO1, PA3049 (rmf)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3049
Name
rmf
Replicon chromosome
Genomic location 3414401 - 3414613 (+ strand)
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_251739.1
GI 15598245
Affymetrix PA3049_rmf_at
DNASU PaCD00007344
Entrez 882866
GenBank AAG06437.1
INSDC AAG06437.1
NCBI Locus Tag PA3049
protein_id(GenBank) gb|AAG06437.1|AE004730_1|gnl|PseudoCAP|PA3049
TIGR NTL03PA03049
UniParc UPI00000C58E9
UniProtKB Acc Q9HZF9
UniProtKB ID Q9HZF9_PSEAE
UniRef100 UniRef100_W0YV42
UniRef50 UniRef50_E4PJF6
UniRef90 UniRef90_M4WZB2

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosome modulation factor
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 6.43
Kyte-Doolittle Hydrophobicity Value -1.049
Molecular Weight (kDa) 8.1
Isoelectric Point (pI) 11.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 50 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002539 (319 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3049
Search term: rmf

Human Homologs

References

Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells.
Wada A, Yamazaki Y, Fujita N, Ishihama A
Proc Natl Acad Sci U S A 1990 Apr;87(7):2657-61
PubMed ID: 2181444
Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent control.
Yamagishi M, Matsushima H, Wada A, Sakagami M, Fujita N, Ishihama A
EMBO J 1993 Feb;12(2):625-30
PubMed ID: 8440252