Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4241
|
Name |
rpsM
|
Replicon | chromosome |
Genomic location | 4756492 - 4756848 (- strand) |
RefSeq | NP_252931.1 |
GI | 15599437 |
Affymetrix | PA4241_rpsM_at |
DNASU | PaCD00007839 |
Entrez | 881818 |
GenBank | AAG07629.1 |
INSDC | AAG07629.1 |
NCBI Locus Tag | PA4241 |
protein_id(GenBank) | gb|AAG07629.1|AE004841_7|gnl|PseudoCAP|PA4241 |
TIGR | NTL03PA04242 |
UniParc | UPI00000C5C7F |
UniProtKB Acc | Q9HWF7 |
UniProtKB ID | RS13_PSEAE |
UniRef100 | UniRef100_B7V665 |
UniRef50 | UniRef50_O46912 |
UniRef90 | UniRef90_A6UZL0 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S13
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 15.40 |
Kyte-Doolittle Hydrophobicity Value | -0.681 |
Molecular Weight (kDa) | 13.3 |
Isoelectric Point (pI) | 11.53 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
6SPC | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.95 | ELECTRON MICROSCOPY | 99.1 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 659 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001469 (534 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4241
Search term: rpsM
Search term: 30S ribosomal protein S13
|
Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli.
Bedwell D, Davis G, Gosink M, Post L, Nomura M, Kestler H, Zengel JM, Lindahl L
Nucleic Acids Res 1985 Jun 11;13(11):3891-903
PubMed ID: 2989779
|
Placement of dinitrophenyl-modified ribosomal proteins in totally reconstituted Escherichia coli 30 S subunits. Localization of proteins S6, S13, S16, and S18 by immune electron microscopy.
Montesano-Roditis L, McWilliams R, Glitz DG, Olah TV, Perrault AR, Cooperman BS
J Biol Chem 1993 Sep 5;268(25):18701-9
PubMed ID: 8360163
|
Antisuppression by a mutation in rpsM(S13) giving a shortened ribosomal protein S13.
Faxén M, Walles-Granberg A, Isaksson LA
Biochim Biophys Acta 1994 May 17;1218(1):27-34
PubMed ID: 8193163
|