Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA0455
|
Name |
dbpA
|
Replicon | chromosome |
Genomic location | 513051 - 514427 (- strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_249146.1 |
GI | 15595652 |
Affymetrix | PA0455_dbpA_at |
Entrez | 881459 |
GenBank | AAG03844.1 |
INSDC | AAG03844.1 |
NCBI Locus Tag | PA0455 |
protein_id(GenBank) | gb|AAG03844.1|AE004483_2|gnl|PseudoCAP|PA0455 |
TIGR | NTL03PA00456 |
UniParc | UPI00000C5065 |
UniProtKB Acc | Q9I663 |
UniProtKB ID | Q9I663_PSEAE |
UniRef100 | UniRef100_Q9I663 |
UniRef50 | UniRef50_P21693 |
UniRef90 | UniRef90_Q9I663 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
RNA helicase DbpA
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 6.18 |
Kyte-Doolittle Hydrophobicity Value | -0.034 |
Molecular Weight (kDa) | 49.8 |
Isoelectric Point (pI) | 8.40 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 617 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000446 (534 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA0455
Search term: dbpA
Search term: RNA helicase DbpA
|
Ensembl
110, assembly
GRCh38.p14
|
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value:
8.3e-62
Percent Identity:
40.3
|
Ensembl
110, assembly
GRCh38.p14
|
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value:
8.3e-62
Percent Identity:
40.3
|
Ensembl
110, assembly
GRCh38.p14
|
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value:
8.3e-62
Percent Identity:
40.3
|
Ensembl
110, assembly
GRCh38.p14
|
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value:
8.3e-62
Percent Identity:
40.3
|
DbpA: a DEAD box protein specifically activated by 23s rRNA.
Fuller-Pace FV, Nicol SM, Reid AD, Lane DP
EMBO J 1993 Sep;12(9):3619-26
PubMed ID: 8253085
|
Characterization of DbpA, an Escherichia coli DEAD box protein with ATP independent RNA unwinding activity.
Böddeker N, Stade K, Franceschi F
Nucleic Acids Res 1997 Feb 1;25(3):537-45
PubMed ID: 9016593
|
Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins.
Kossen K, Uhlenbeck OC
Nucleic Acids Res 1999 Oct 1;27(19):3811-20
PubMed ID: 10481020
|