Pseudomonas aeruginosa PAO1, PA0992 (cupC1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA0992
Name
cupC1
Replicon chromosome
Genomic location 1073285 - 1073902 (+ strand)
Transposon Mutants 1 transposon mutants in PAO1
Transposon Mutants in orthologs 5 transposon mutants in orthologs

Cross-References

RefSeq NP_249683.1
GI 15596189
Affymetrix PA0992_at
DNASU PaCD00006458
Entrez 880617
GenBank AAG04381.1
INSDC AAG04381.1
NCBI Locus Tag PA0992
protein_id(GenBank) gb|AAG04381.1|AE004532_5|gnl|PseudoCAP|PA0992
TIGR NTL03PA00993
UniParc UPI00000C51F4
UniProtKB Acc Q9I4X7
UniProtKB ID Q9I4X7_PSEAE
UniRef100 UniRef100_Q9I4X7
UniRef50 UniRef50_Q9I4X7
UniRef90 UniRef90_Q9I4X7

Product

Feature Type CDS
Coding Frame 1
Product Name
fimbrial subunit CupC1
Product Name Confidence: Class 2
Synonyms probable fimbrial subunit protein
Evidence for Translation
Charge (pH 7) -3.83
Kyte-Doolittle Hydrophobicity Value 0.179
Molecular Weight (kDa) 20.0
Isoelectric Point (pI) 4.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Unknown Class 3
Fimbrial
Note: This is based on PSORTb V3.0 secondary localization prediction
Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 27 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000955 (1599 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0992
Search term: cupC1

References

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.
Burland V, Plunkett G, Sofia HJ, Daniels DL, Blattner FR
Nucleic Acids Res. 1995 Jun;23(12):2105-19
PubMed ID: 7610040