Pseudomonas fluorescens F113, PSF113_2411 (clpB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_2411
Name
clpB
Replicon chromosome
Genomic location 2810386 - 2812929 (- strand)

Cross-References

RefSeq YP_005207815.1
GI 378950327
EC Number 3.6.1.15
Entrez 11830504
INSDC AEV62420.1
NCBI Locus Tag PSF113_2411
UniParc UPI00023B3BCB
UniProtKB Acc G8QBH3
UniProtKB ID G8QBH3_PSEFL
UniRef100 UniRef100_G8QBH3
UniRef50 UniRef50_G8QBH3
UniRef90 UniRef90_G8QBH3

Product

Feature Type CDS
Coding Frame 1
Product Name
chaperone ClpB
Synonyms
Evidence for Translation
Charge (pH 7) -15.74
Kyte-Doolittle Hydrophobicity Value -0.173
Molecular Weight (kDa) 92428.6
Isoelectric Point (pI) 5.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 597 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000089 (1168 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_2411
Search term: clpB
Search term: chaperone ClpB

Human Homologs

Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 9.1e-30
Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 9.1e-30
Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 9.1e-30
Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 9.1e-30
Percent Identity: 39.3

References

No references are associated with this feature.