Pseudomonas putida S16, PPS_5187

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5187
Name
Replicon chromosome
Genomic location 5880961 - 5882385 (+ strand)

Cross-References

RefSeq YP_004704594.1
GI 339490066
Entrez 10940797
INSDC AEJ15714.1
NCBI Locus Tag PPS_5187
UniParc UPI000217313B
UniProtKB Acc F8G0V2
UniProtKB ID F8G0V2_PSEP6
UniRef100 UniRef100_A0A0B5K7I9
UniRef50 UniRef50_P07346
UniRef90 UniRef90_P07346

Product

Feature Type CDS
Coding Frame 1
Product Name
aspartate ammonia-lyase
Synonyms
Evidence for Translation
Charge (pH 7) -7.46
Kyte-Doolittle Hydrophobicity Value 0.066
Molecular Weight (kDa) 51.0
Isoelectric Point (pI) 5.80

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 620 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004982 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5187

Human Homologs

Ensembl 110, assembly GRCh38.p14
fumarate hydratase [Source:HGNC Symbol;Acc:HGNC:3700]
E-value: 4.4e-98
Percent Identity: 42.1

References

No references are associated with this feature.