Pseudomonas aeruginosa UCBPP-PA14, PA14_39800

Gene Feature Overview

Strain	Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006) GCF_000014625.1|latest
Locus Tag	PA14_39800
Name
Replicon	chromosome
Genomic location	3546403 - 3546909 (+ strand)
Transposon Mutants	1 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs	7 transposon mutants in orthologs

Cross-References

RefSeq	YP_791327.1
GI	116049864
Entrez	4380236
INSDC	ABJ11100.1
NCBI Locus Tag	PA14_39800
UniParc	UPI00000C5502
UniProtKB Acc	Q02L59
UniProtKB ID	Q02L59_PSEAB
UniRef100	UniRef100_W0YSL2
UniRef50	UniRef50_G8PZ98
UniRef90	UniRef90_A6V6P7

Product

Feature Type	CDS
Coding Frame	1
Product Name	ECF subfamily RNA polymerase sigma-70 factor
Synonyms
Evidence for Translation
Charge (pH 7)	-1.87
Kyte-Doolittle Hydrophobicity Value	-0.218
Molecular Weight (kDa)	19.1
Isoelectric Point (pI)	6.35

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 304 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000463 (1798 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA14_39800 Search term: ECF subfamily RNA polymerase sigma-70 factor

Human Homologs

References