Pseudomonas aeruginosa DK2, PADK2_02595

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas aeruginosa DK2
GCF_000271365.1|latest
Locus Tag
PADK2_02595
Name
Replicon chromosome
Genomic location 568605 - 569783 (- strand)

Cross-References

RefSeq YP_006480514.1
GI 392981927
Entrez 13170973
NCBI Locus Tag PADK2_02595

Product

Feature Type CDS
Coding Frame 1
Product Name
heme d1 biosynthesis protein NirF
Synonyms
Evidence for Translation
Charge (pH 7) -2.62
Kyte-Doolittle Hydrophobicity Value -0.253
Molecular Weight (kDa) 43.3
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6TV2 UNKNOWN FUNCTION 01/08/20 Heme d1 biosynthesis associated Protein NirF Pseudomonas aeruginosa PAO1 1.561 X-RAY DIFFRACTION 100.0
6TV9 UNKNOWN FUNCTION 01/09/20 Heme d1 biosynthesis associated Protein NirF in complex with dihydro-heme d1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.893 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 70 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000494 (709 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PADK2_02595

Human Homologs

References

No references are associated with this feature.