Pseudomonas mendocina NK-01, MDS_3370

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_3370
Name
Replicon	chromosome
Genomic location	3728857 - 3730023 (- strand)

Cross-References

RefSeq	YP_004381153.1
GI	330504284
Entrez	10458152
INSDC	AEB59401.1
NCBI Locus Tag	MDS_3370
UniParc	UPI000206E324
UniProtKB Acc	F4DPT9
UniProtKB ID	F4DPT9_PSEMN
UniRef100	UniRef100_F4DPT9
UniRef50	UniRef50_G8PWC9
UniRef90	UniRef90_F4DPT9

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-1.24
Kyte-Doolittle Hydrophobicity Value	-0.077
Molecular Weight (kDa)	42271.5
Isoelectric Point (pI)	6.52

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002429 (526 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_3370 Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000265724 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 1.4e-22 Percent Identity: 34.3
Ensembl 110, assembly GRCh38.p14	ENSP00000444095 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 1.4e-22 Percent Identity: 34.3
Ensembl 110, assembly GRCh38.p14	ENSP00000478255 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 1.4e-22 Percent Identity: 34.3

References