Pseudomonas syringae pv. tomato DC3000, PSPTO_0176

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0176
NCBI Old Locus Tag	PSPTO0176
Name	Synonym: PSPTO0176
Replicon	chromosome
Genomic location	197323 - 198348 (- strand)

Cross-References

RefSeq	NP_790035.1
GI	28867416
Entrez	1181784
INSDC	AAO53730.1
NCBI Locus Tag	PSPTO_0176
NCBI Old Locus Tag	PSPTO0176
UniParc	UPI000000833D
UniProtKB Acc	Q88B44
UniProtKB ID	Q88B44_PSESM
UniRef100	UniRef100_Q88B44
UniRef50	UniRef50_C1DFV9
UniRef90	UniRef90_Q88B44

Product

Feature Type	CDS
Coding Frame	1
Product Name	LysM domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	2.48
Kyte-Doolittle Hydrophobicity Value	-0.229
Molecular Weight (kDa)	37.6
Isoelectric Point (pI)	9.12

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 108 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000020 (467 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0176 Search term: LysM domain-containing protein

Human Homologs

References