Pseudomonas syringae pv. tomato DC3000, PSPTO_0301 (gabT-2)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0301
NCBI Old Locus Tag	PSPTO0301
Name	gabT-2 Synonym: PSPTO0301
Replicon	chromosome
Genomic location	327391 - 328671 (+ strand)

Cross-References

RefSeq	NP_790151.1
GI	28867532
Entrez	1181910
INSDC	AAO53846.1
NCBI Locus Tag	PSPTO_0301
NCBI Old Locus Tag	PSPTO0301
UniParc	UPI00000083AA
UniProtKB Acc	Q88AT5
UniProtKB ID	Q88AT5_PSESM
UniRef100	UniRef100_Q88AT5
UniRef50	UniRef50_P22256
UniRef90	UniRef90_G8PZ77

Product

Feature Type	CDS
Coding Frame	1
Product Name	4-aminobutyrate aminotransferase
Synonyms
Evidence for Translation
Charge (pH 7)	-6.86
Kyte-Doolittle Hydrophobicity Value	0.247
Molecular Weight (kDa)	45.0
Isoelectric Point (pI)	5.83

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 639 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000263 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0301 Search term: gabT-2 Search term: 4-aminobutyrate aminotransferase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000357838 ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091] E-value: 2.1e-43 Percent Identity: 30.7

References