Pseudomonas syringae pv. tomato DC3000, PSPTO_0461 (glyA-1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0461
NCBI Old Locus TagPSPTO0461
Name
glyA-1
Synonym: PSPTO0461
Replicon chromosome
Genomic location 505408 - 506661 (- strand)

Cross-References

RefSeq NP_790310.1
GI 28867691
Entrez 1182070
INSDC AAO54005.1
NCBI Locus Tag PSPTO_0461
NCBI Old Locus Tag PSPTO0461
UniParc UPI0000008447
UniProtKB Acc Q88AD1
UniProtKB ID GLYA1_PSESM
UniRef100 UniRef100_Q88AD1
UniRef50 UniRef50_P9WGI9
UniRef90 UniRef90_Q48CP3

Product

Feature Type CDS
Coding Frame 1
Product Name
serine hydroxymethyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -4.54
Kyte-Doolittle Hydrophobicity Value -0.099
Molecular Weight (kDa) 44.9
Isoelectric Point (pI) 6.29

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 654 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003094 (1150 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0461
Search term: glyA-1

Human Homologs

Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 7.0e-92
Percent Identity: 46.8
Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 7.0e-92
Percent Identity: 46.8
Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 7.0e-92
Percent Identity: 46.8
Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 7.0e-92
Percent Identity: 46.8

References

No references are associated with this feature.