Strain |
Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest |
Locus Tag |
PSPTO_0539
|
NCBI Old Locus Tag | PSPTO0539 |
Name |
rpsU
Synonym: PSPTO0539 |
Replicon | chromosome |
Genomic location | 593192 - 593407 (- strand) |
RefSeq | NP_790386.1 |
GI | 28867767 |
Entrez | 1182149 |
INSDC | AAO54081.1 |
NCBI Locus Tag | PSPTO_0539 |
NCBI Old Locus Tag | PSPTO0539 |
UniParc | UPI0000008490 |
UniProtKB Acc | Q88A58 |
UniProtKB ID | RS21_PSESM |
UniRef100 | UniRef100_Q48NU9 |
UniRef50 | UniRef50_B4RY34 |
UniRef90 | UniRef90_C1DIY4 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S21
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 13.19 |
Kyte-Doolittle Hydrophobicity Value | -1.032 |
Molecular Weight (kDa) | 8.4 |
Isoelectric Point (pI) | 11.44 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 96.8 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 96.8 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 95.8 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 95.8 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 95.8 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 95.8 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 357 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000562 (493 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PSPTO_0539
Search term: rpsU
Search term: 30S ribosomal protein S21
|