Pseudomonas syringae pv. tomato DC3000, PSPTO_1842 (alaS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_1842
NCBI Old Locus TagPSPTO1842
Name
alaS
Synonym: PSPTO1842
Replicon chromosome
Genomic location 2010440 - 2013064 (+ strand)

Cross-References

RefSeq NP_791666.1
GI 28869047
Entrez 1183483
INSDC AAO55361.1
NCBI Locus Tag PSPTO_1842
NCBI Old Locus Tag PSPTO1842
UniParc UPI000000896F
UniProtKB Acc Q885J0
UniProtKB ID SYA_PSESM
UniRef100 UniRef100_Q885J0
UniRef50 UniRef50_Q6D1T0
UniRef90 UniRef90_Q4ZQI4

Product

Feature Type CDS
Coding Frame 1
Product Name
alanyl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -23.13
Kyte-Doolittle Hydrophobicity Value -0.184
Molecular Weight (kDa) 94.5
Isoelectric Point (pI) 5.15

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 666 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000870 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_1842
Search term: alaS

Human Homologs

Ensembl 110, assembly GRCh38.p14
alanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:20]
E-value: 1.5e-128
Percent Identity: 35.4

References

No references are associated with this feature.