Pseudomonas syringae pv. tomato DC3000, PSPTO_3165

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3165
NCBI Old Locus Tag	PSPTO3165
Name	Synonym: PSPTO3165
Replicon	chromosome
Genomic location	3558140 - 3558619 (+ strand)

Cross-References

RefSeq	NP_792955.1
GI	28870336
Entrez	1184822
INSDC	AAO56650.1
NCBI Locus Tag	PSPTO_3165
NCBI Old Locus Tag	PSPTO3165
UniParc	UPI0000008E57
UniProtKB Acc	Q880J2
UniProtKB ID	Q880J2_PSESM
UniRef100	UniRef100_Q880J2
UniRef50	UniRef50_Q880J2
UniRef90	UniRef90_Q880J2

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7)	1.20
Kyte-Doolittle Hydrophobicity Value	0.239
Molecular Weight (kDa)	16.9
Isoelectric Point (pI)	8.50

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 34 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000125 (507 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3165 Search term: lipoprotein

Human Homologs

References