Pseudomonas syringae pv. tomato DC3000, PSPTO_4300

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4300
NCBI Old Locus Tag	PSPTO4300
Name	Synonym: PSPTO4300
Replicon	chromosome
Genomic location	4846462 - 4847976 (+ strand)

Cross-References

RefSeq	NP_794056.1
GI	28871437
Entrez	1185981
INSDC	AAO57751.1
NCBI Locus Tag	PSPTO_4300
NCBI Old Locus Tag	PSPTO4300
UniParc	UPI0000009279
UniProtKB Acc	Q87X88
UniProtKB ID	Q87X88_PSESM
UniRef100	UniRef100_Q87X88
UniRef50	UniRef50_Q4K783
UniRef90	UniRef90_Q48EP7

Product

Feature Type	CDS
Coding Frame	1
Product Name	drug resistance transporter, EmrB/QacA family
Synonyms
Evidence for Translation
Charge (pH 7)	9.85
Kyte-Doolittle Hydrophobicity Value	0.752
Molecular Weight (kDa)	53.1
Isoelectric Point (pI)	9.83

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000244 (488 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4300 Search term: drug resistance transporter, EmrB/QacA family

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000258436 major facilitator superfamily domain containing 9 [Source:HGNC Symbol;Acc:HGNC:28158] E-value: 4.5e-08 Percent Identity: 31.8

References