Pseudomonas syringae pv. tomato DC3000, PSPTO_5008

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5008
NCBI Old Locus Tag	PSPTO5008
Name	Synonym: PSPTO5008
Replicon	chromosome
Genomic location	5693047 - 5694225 (+ strand)

Cross-References

RefSeq	NP_794741.1
GI	28872122
Entrez	1186693
INSDC	AAO58436.1
NCBI Locus Tag	PSPTO_5008
NCBI Old Locus Tag	PSPTO5008
UniParc	UPI0000009505
UniProtKB Acc	Q87VD1
UniProtKB ID	Q87VD1_PSESM
UniRef100	UniRef100_Q87VD1
UniRef50	UniRef50_P44941
UniRef90	UniRef90_Q87VD1

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-3.15
Kyte-Doolittle Hydrophobicity Value	-0.045
Molecular Weight (kDa)	42.7
Isoelectric Point (pI)	6.57

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown (This protein may have multiple localization sites) Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 396 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000543 (527 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5008

Human Homologs

References