Pseudomonas syringae pv. tomato DC3000, PSPTO_5013

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5013
NCBI Old Locus Tag	PSPTO5013
Name	Synonym: PSPTO5013
Replicon	chromosome
Genomic location	5698372 - 5698896 (- strand)

Cross-References

RefSeq	NP_794746.1
GI	28872127
Entrez	1186698
INSDC	AAO58441.1
NCBI Locus Tag	PSPTO_5013
NCBI Old Locus Tag	PSPTO5013
UniParc	UPI000000950A
UniProtKB Acc	Q87VC6
UniProtKB ID	Q87VC6_PSESM
UniRef100	UniRef100_Q87VC6
UniRef50	UniRef50_A2SEL1
UniRef90	UniRef90_S3MA27

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	7.36
Kyte-Doolittle Hydrophobicity Value	-0.395
Molecular Weight (kDa)	20.0
Isoelectric Point (pI)	9.61

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 93 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000544 (528 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5013

Human Homologs

References