Pseudomonas syringae pv. tomato DC3000, PSPTO_5072

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5072
NCBI Old Locus Tag	PSPTO5072
Name	Synonym: PSPTO5072
Replicon	chromosome
Genomic location	5776971 - 5777525 (- strand)

Cross-References

RefSeq	NP_794804.1
GI	28872185
Entrez	1186757
INSDC	AAO58499.1
NCBI Locus Tag	PSPTO_5072
NCBI Old Locus Tag	PSPTO5072
UniParc	UPI0000009543
UniProtKB Acc	Q87V69
UniProtKB ID	Q87V69_PSESM
UniRef100	UniRef100_Q87V69
UniRef50	UniRef50_Q87V69
UniRef90	UniRef90_Q87V69

Product

Feature Type	CDS
Coding Frame	1
Product Name	cytochrome b561
Synonyms
Evidence for Translation
Charge (pH 7)	6.90
Kyte-Doolittle Hydrophobicity Value	0.679
Molecular Weight (kDa)	20.3
Isoelectric Point (pI)	10.04

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 178 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000413 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5072 Search term: cytochrome b561

Human Homologs

References