Pseudomonas protegens Pf-5, PFL_0088 (amiD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0088
Name
amiD
Replicon chromosome
Genomic location 87759 - 88538 (+ strand)

Cross-References

RefSeq YP_257240.1
GI 70733600
EC Number 3.5.1.28
Entrez 3480687
INSDC AAY95505.1
NCBI Locus Tag PFL_0088
UniParc UPI000054CBB6
UniProtKB Acc Q4KKJ3
UniProtKB ID Q4KKJ3_PSEF5
UniRef100 UniRef100_Q4KKJ3
UniRef50 UniRef50_Q4KKJ3
UniRef90 UniRef90_Q4KKJ3

Product

Feature Type CDS
Coding Frame 1
Product Name
N-acetylmuramoyl-L-alanine amidase
Synonyms
Evidence for Translation
Charge (pH 7) 4.88
Kyte-Doolittle Hydrophobicity Value -0.235
Molecular Weight (kDa) 28.8
Isoelectric Point (pI) 9.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 246 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005025 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0088
Search term: amiD

Human Homologs

References

No references are associated with this feature.