Pseudomonas protegens Pf-5, PFL_1876 (oprF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1876
Name
oprF
Replicon chromosome
Genomic location 2084809 - 2085786 (+ strand)

Cross-References

RefSeq YP_258995.1
GI 70729258
Entrez 3477625
INSDC AAY91163.1
NCBI Locus Tag PFL_1876
UniParc UPI000054D289
UniProtKB Acc Q4KFI8
UniProtKB ID Q4KFI8_PSEF5
UniRef100 UniRef100_A9Q6I0
UniRef50 UniRef50_P13794
UniRef90 UniRef90_A9Q6I0

Product

Feature Type CDS
Coding Frame 1
Product Name
porin
Synonyms
Evidence for Translation
Charge (pH 7) -3.56
Kyte-Doolittle Hydrophobicity Value -0.416
Molecular Weight (kDa) 34.6
Isoelectric Point (pI) 5.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 438 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003618 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1876
Search term: oprF
Search term: porin

Human Homologs

References

No references are associated with this feature.