Pseudomonas protegens Pf-5, PFL_5816 (mdcE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5816
Name
mdcE
Replicon chromosome
Genomic location 6622847 - 6623650 (- strand)

Cross-References

RefSeq YP_262874.1
GI 70733101
EC Number 4.1.-.-
Entrez 3480188
INSDC AAY95006.1
NCBI Locus Tag PFL_5816
UniParc UPI000054E173
UniProtKB Acc Q4K4F9
UniProtKB ID Q4K4F9_PSEF5
UniRef100 UniRef100_Q4K4F9
UniRef50 UniRef50_Q4K4F9
UniRef90 UniRef90_Q4K4F9

Product

Feature Type CDS
Coding Frame 1
Product Name
malonate decarboxylase subunit gamma
Synonyms
Evidence for Translation
Charge (pH 7) 0.17
Kyte-Doolittle Hydrophobicity Value -0.025
Molecular Weight (kDa) 28480.2
Isoelectric Point (pI) 7.08

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 57 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000211 (478 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5816
Search term: mdcE

Human Homologs

References

No references are associated with this feature.