Pseudomonas protegens Pf-5, PFL_6173

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6173
Name
Replicon chromosome
Genomic location 7011143 - 7012351 (- strand)

Cross-References

RefSeq YP_263231.1
GI 70733456
Entrez 3480543
INSDC AAY95361.1
NCBI Locus Tag PFL_6173
UniParc UPI000054E2D3
UniProtKB Acc Q4K3F2
UniProtKB ID Q4K3F2_PSEF5
UniRef100 UniRef100_Q4K3F2
UniRef50 UniRef50_Q8GIW1
UniRef90 UniRef90_Q4K3F2

Product

Feature Type CDS
Coding Frame 1
Product Name
CobW/P47K family protein
Synonyms
Evidence for Translation
Charge (pH 7) -23.98
Kyte-Doolittle Hydrophobicity Value -0.218
Molecular Weight (kDa) 45258.7
Isoelectric Point (pI) 4.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 364 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005068 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6173

Human Homologs

Ensembl 110, assembly GRCh38.p14
Zn regulated GTPase metalloprotein activator 1B [Source:HGNC Symbol;Acc:HGNC:17907]
E-value: 9.7e-30
Percent Identity: 31.8

References

No references are associated with this feature.