Pseudomonas protegens Pf-5, PFL_6174

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6174
Name
Replicon chromosome
Genomic location 7012382 - 7012786 (- strand)

Cross-References

RefSeq YP_263232.1
GI 70733457
Entrez 3480544
INSDC AAY95362.1
NCBI Locus Tag PFL_6174
UniParc UPI000054E2D4
UniProtKB Acc Q4K3F1
UniProtKB ID Q4K3F1_PSEF5
UniRef100 UniRef100_Q4K3F1
UniRef50 UniRef50_Q9HT38
UniRef90 UniRef90_Q4K3F1

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase-binding protein DksA
Synonyms
Evidence for Translation
Charge (pH 7) -5.34
Kyte-Doolittle Hydrophobicity Value -0.969
Molecular Weight (kDa) 15.8
Isoelectric Point (pI) 4.94

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 393 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005069 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6174

Human Homologs

References

No references are associated with this feature.