Pseudomonas denitrificans ATCC 13867, H681_06740 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_06740
Name
rnc
Replicon chromosome
Genomic location 1472666 - 1473355 (+ strand)

Cross-References

RefSeq YP_007656764.1
GI 472324518
EC Number 3.1.26.3
Entrez 14995482
INSDC AGI23224.1
NCBI Locus Tag H681_06740
UniParc UPI0002C4F1D8
UniProtKB Acc M4WTY4
UniProtKB ID M4WTY4_PSEDE
UniRef100 UniRef100_M4WTY4
UniRef50 UniRef50_B7UYX2
UniRef90 UniRef90_B7UYX2

Product

Feature Type CDS
Coding Frame 1
Product Name
ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7) -2.64
Kyte-Doolittle Hydrophobicity Value -0.279
Molecular Weight (kDa) 25525.8
Isoelectric Point (pI) 6.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000744 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_06740
Search term: rnc
Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 1.8e-12
Percent Identity: 35.1
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 1.8e-12
Percent Identity: 35.1
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 1.8e-12
Percent Identity: 35.1
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 1.8e-12
Percent Identity: 27.0

References

No references are associated with this feature.