Pseudomonas aeruginosa LESB58, PALES_05131 (nirF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa LESB58
GCF_000026645.1|latest |
| Locus Tag |
PALES_05131
|
| Name |
nirF
|
| Replicon | chromosome |
| Genomic location | 568783 - 569961 (- strand) |
Cross-References
| RefSeq | YP_002438121 |
| GI | 218889257 |
| Entrez | 7175527 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
heme d1 biosynthesis protein NirF
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.62 |
| Kyte-Doolittle Hydrophobicity Value | -0.256 |
| Molecular Weight (kDa) | 43.3 |
| Isoelectric Point (pI) | 6.52 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6TV2 | UNKNOWN FUNCTION | 01/08/20 | Heme d1 biosynthesis associated Protein NirF | Pseudomonas aeruginosa PAO1 | 1.561 | X-RAY DIFFRACTION | 100.0 |
| 6TV9 | UNKNOWN FUNCTION | 01/09/20 | Heme d1 biosynthesis associated Protein NirF in complex with dihydro-heme d1 | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 1.893 | X-RAY DIFFRACTION | 100.0 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 69 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000494 (709 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PALES_05131
Search term: nirF
Search term: heme d1 biosynthesis protein NirF
|
Human Homologs
References
No references are associated with this feature.