Motif View

Internal ID 17655681
Source Database TransTermHP TERM 138
Feature Type terminator
Name
Rho-independent transcription terminator TERM 138
Sequence AAAGGCGGATGACGCAAACGCCATCCGCCTTC
Look for more occurrences
Start 672481
End 672512
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGAGGCGGAAGAAAA(5' tail) GAAGGCGGATGGCG(5' stem) TTTG(loop) CGTCATCCGCCTTT(3' stem) TTTGTGCCCGGCGTG(3' tail). Confidence: 100. opp_overlap 672484, overlap 672484

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685