Motif View

Internal ID 17655722
Source Database TransTermHP TERM 188
Feature Type terminator
Name
Rho-independent transcription terminator TERM 188
Sequence GCCCATCCTCGGATGGGC
Look for more occurrences
Start 841879
End 841896
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATGAAAGCAAAAAAA(5' tail) GCCCATC(5' stem) CGAG(loop) GATGGGC(3' stem) TTTTCCCTATTCGCT(3' tail). Confidence: 100. opp_overlap 841879

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685