Motif View

Internal ID 17655735
Source Database TransTermHP TERM 209
Feature Type terminator
Name
Rho-independent transcription terminator TERM 209
Sequence GCCCGCGCTGGTCAGTCGCGGGC
Look for more occurrences
Start 904654
End 904676
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCCTTCATGAAGAA(5' tail) GCCCGCG-CT(5' stem) GGTC(loop) AGTCGCGGGC(3' stem) TTTTTAATGCGTGGA(3' tail). Confidence: 100. gap 1, opp_overlap 904654

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685