Motif View

Internal ID 17655755
Source Database TransTermHP TERM 241
Feature Type terminator
Name
Rho-independent transcription terminator TERM 241
Sequence GGCGAAAGGCGCGGCAACCCCGCGCCTTTTGTC
Look for more occurrences
Start 990837
End 990869
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGAGTGACGCTGACA(5' tail) GGCGAAAGGCGCGG(5' stem) CAACC(loop) CCGCGCCTTTTGTC(3' stem) GTTTTTGACCGTTTG(3' tail). Confidence: 93. opp_overlap 990844, overlap 990836 990844

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685