Motif View

Internal ID 17655927
Source Database TransTermHP TERM 499
Feature Type terminator
Name
Rho-independent transcription terminator TERM 499
Sequence GCCCCGCATCGCGGGGC
Look for more occurrences
Start 2151245
End 2151261
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGAATACGAAGAA(5' tail) GCCCCGC(5' stem) ATC(loop) GCGGGGC(3' stem) TTTCTCTTGGCCGTT(3' tail). Confidence: 100. opp_overlap 2151245

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685