Motif View

Internal ID 17656189
Source Database TransTermHP TERM 918
Feature Type terminator
Name
Rho-independent transcription terminator TERM 918
Sequence TGGGCGGGGTAATACCCCGCCCC
Look for more occurrences
Start 4057548
End 4057570
Strand -
Genomic Context Located within gene rsmZ
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAGGCAAAAAAAA(5' tail) GGGGCGGGGT(5' stem) ATT(loop) ACCCCGCCCA(3' stem) CTCTTCAGTCCCTCG(3' tail). Confidence: 100. opp_overlap 4057548, overlap 4057549

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685