Motif View

Internal ID 17656190
Source Database TransTermHP TERM 919
Feature Type terminator
Name
Rho-independent transcription terminator TERM 919
Sequence GGGCGGGGTAATACCCCGCCC
Look for more occurrences
Start 4057549
End 4057569
Strand -
Genomic Context Located within gene rsmZ
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCAAAAAAAAG(5' tail) GGGCGGGGT(5' stem) ATT(loop) ACCCCGCCC(3' stem) ACTCTTCAGTCCCTC(3' tail). Confidence: 100. opp_overlap 4057548, overlap 4057548

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685