Motif View

Internal ID 17656214
Source Database TransTermHP TERM 953
Feature Type terminator
Name
Rho-independent transcription terminator TERM 953
Sequence CCGCCTTCGGGCGG
Look for more occurrences
Start 4140846
End 4140859
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGCCATGAAAAAA(5' tail) CCGCC(5' stem) CGAA(loop) GGCGG(3' stem) CTTTTCCATGGACTG(3' tail). Confidence: 100. opp_overlap 4140846 4140845 4140833

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685