Motif View

Internal ID 17656559
Source Database TransTermHP TERM 1493
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1493
Sequence CGCCGGCTATCGCCGGCG
Look for more occurrences
Start 6047328
End 6047345
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCTAGACGCAGGAA(5' tail) CGCCGGC(5' stem) TATC(loop) GCCGGCG(3' stem) TTCTTGTTTGCGCGT(3' tail). Confidence: 90. opp_overlap 6047328, overlap 6047325 6047322

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685