Motif View

Internal ID 17656637
Source Database TransTermHP TERM 87
Feature Type terminator
Name
Rho-independent transcription terminator TERM 87
Sequence GCCCGGTCCCGCGCCGGGC
Look for more occurrences
Start 410179
End 410197
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCGAATGAAAAA(5' tail) GCCCGGC(5' stem) GCGGG(loop) ACCGGGC(3' stem) TTTTTTCGTCGCGGG(3' tail). Confidence: 100. opp_overlap 410179

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685