Motif View

Internal ID 17657178
Source Database TransTermHP TERM 955
Feature Type terminator
Name
Rho-independent transcription terminator TERM 955
Sequence GCCCCTGCCATCGCGGCAGGGGC
Look for more occurrences
Start 4198184
End 4198206
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCGGCAGGAAAAA(5' tail) GCCCCTGCC(5' stem) GCGAT(loop) GGCAGGGGC(3' stem) TTGCCGTTTTGGCCG(3' tail). Confidence: 100. opp_overlap 4198179 4198178

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685