Motif View

Internal ID 17657192
Source Database TransTermHP TERM 975
Feature Type terminator
Name
Rho-independent transcription terminator TERM 975
Sequence CACAAGGCACTCCGACCATCGGGTGCCTTGTG
Look for more occurrences
Start 4334980
End 4335011
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGGACGGAAAACGA(5' tail) CACAAGGCAC-CCGA(5' stem) TGG(loop) TCGGAGTGCCTTGTG(3' stem) TCCGGGACAGCGGCG(3' tail). Confidence: 91. gap 1, opp_overlap 4334985, overlap 4334978 4334977

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685