Motif View

Internal ID 17657206
Source Database TransTermHP TERM 997
Feature Type terminator
Name
Rho-independent transcription terminator TERM 997
Sequence GGGGATGGCAGGCCGGCACGCAGATGTGCCACGCTCCATCCCC
Look for more occurrences
Start 4444853
End 4444895
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGGGGACTACGAA(5' tail) GGGGATGGCAGGCCGGCACG(5' stem) CAGA(loop) TGTGCCACGCT-CCATCCCC(3' stem) TTTTTCATTGCCTGA(3' tail). Confidence: 100. gap 1, opp_overlap 4444853

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685