Motif View

Internal ID 17657207
Source Database TransTermHP TERM 999
Feature Type terminator
Name
Rho-independent transcription terminator TERM 999
Sequence CCCCTGCCAGTACTGCTTTCCATGCGGTCTGTAGGGG
Look for more occurrences
Start 4462521
End 4462557
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGAGGCAATAAAAAA(5' tail) CCCCTA-CAG-ACCGCAT(5' stem) GGA(loop) AAGCAGTACTGGCAGGGG(3' stem) TTTTTGGGGATATGT(3' tail). Confidence: 100. gap 2

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685