Motif View

Internal ID 17657211
Source Database TransTermHP TERM 1004
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1004
Sequence GGCCCGATATCGACGATATCGGGCC
Look for more occurrences
Start 4485848
End 4485872
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCAAACGAAAAAA(5' tail) GGCCCGATATC(5' stem) GTC(loop) GATATCGGGCC(3' stem) TTTCCCATGCTTCCG(3' tail). Confidence: 100. opp_overlap 4485848

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685