Motif View

Internal ID 17657454
Source Database TransTermHP TERM 1354
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1354
Sequence GCCCGGCATTCGCCGGGC
Look for more occurrences
Start 5624658
End 5624675
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTTCCACGAAAAA(5' tail) GCCCGGC(5' stem) ATTC(loop) GCCGGGC(3' stem) TTTTTCATTTCCGCA(3' tail). Confidence: 100. opp_overlap 5624658, overlap 5624652 5624651

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685