Motif View

Internal ID 17657536
Source Database TransTermHP TERM 1484
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1484
Sequence GCCCCGGTTTCCGACCGGGGC
Look for more occurrences
Start 6164983
End 6165003
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTTCCCCTATGAAG(5' tail) GCCCCGGTT(5' stem) TCC(loop) GACCGGGGC(3' stem) TTTCTTATTTCCGAC(3' tail). Confidence: 100. opp_overlap 6164982, overlap 6164979

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685