Motif View

Internal ID 17657587
Source Database TransTermHP TERM 1568
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1568
Sequence CTCCCGCTCCCGCCAGGGAGCGGGGG
Look for more occurrences
Start 6493055
End 6493080
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACGGAAATGAAAAA(5' tail) CCCCCGCTCCC(5' stem) TGGC(loop) GGGAGCGGGAG(3' stem) TTTCGGCGGCCCCCG(3' tail). Confidence: 100. opp_overlap 6493055

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685